The journal is delayed open access, content is available free at the journal's website and at PubMed Central after a six-month embargo. For an in-depth discussion of tense in scientific writing, see p. 191-193 in How To Write and Publish a Scientific Paper, 6th ed. The virulence of Staphylococcus aureus depends on the expression of various virulence factors, which is governed by a complex regulatory network. Various pattern backgrounds are preferable to screens as long as the patterns are not imported from another application. Journal of Microbiology & Biology Education, Microbiology and Molecular Biology Reviews, Articles of Significant Interest in This Issue, Intracellular Organization by Jumbo Bacteriophages, Complementary Tendencies in the Use of Regulatory Elements (Transcription Factors, Sigma Factors, and Riboswitches) in Bacteria and Archaea, Structure-Function Characterization of the Conserved Regulatory Mechanism of the, Bacteriophage SP01 Gene Product 56 Inhibits, MgrA Activates Staphylococcal Capsule via SigA-Dependent Promoter, Contact with the CsrA Core Is Required for Allosteric Inhibition by FliW in, Lag Phase Is a Dynamic, Organized, Adaptive, and Evolvable Period That Prepares Bacteria for Cell Division, Type II Toxin-Antitoxin Systems: Evolution and Revolutions, Light Modulates the Physiology of Nonphototrophic, Submission, Review, & Publication Processes, COVID-19 Research and News from ASM Journals. 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Avoid abbreviations and references, and do not include diagrams. ; EMBL Nucleotide Sequence Database (EMBL), http://www.ebi.ac.uk/embl/ Discussion.The Discussion should provide an interpretation of the results in relation to previously published work and to the experimental system at hand and should not contain extensive repetition of the Results section or reiteration of the introduction. ; and Center for Information Biology Gene Expression Database (CIBEX), http://cibex.nig.ac.jp/index.jsp Warranties and ExclusionsArticles published in this journal represent the opinions of the authors and do not necessarily represent the opinions of ASM. 49:158-179, 1985) for Bacillus subtilis. Should coauthors or colleagues be interested in viewing the paper for their own use, the corresponding author may provide them with the URL; a copy of the article may not be forwarded electronically. (ii) JB will consider manuscripts that emphasize the interrelationship of a bacteriophage and a host cell, manuscripts about work in which viruses were used as tools for elucidating the structures or biological processes of microorganisms, and manuscripts that concern phages that are related to transposable elements or plasmids. (Always refer to this number in communications with the editor and the Journals Department.) Bacteria. It is published by the American Society for Microbiology (ASM) and the editor in chief is Thomas J. Silhavy. Illustrations may be continuous-tone images, line drawings, or composites. Thus, representation of 20,000 cpm on a figure ordinate should be made by the number 20 accompanied by the label kcpm. When centrifugation conditions are critical, give enough information to enable another investigator to repeat the procedure: make of centrifuge, model of rotor, temperature, time at maximum speed, and centrifugal force (× g rather than revolutions per minute). However, detailed experimental methods must be described in the Materials and Methods section, not in a figure legend. 62:814-984, 1998) for E. coli K-12, Sanderson and Roth (Microbiol. Mol. For specific chemicals, the symbol for the isotope introduced is placed in square brackets directly preceding the part of the name that describes the labeled entity. Images created with Macintosh applications may be compressed with Stuffit. Enzyme purifications should be described in this section, but the results of such procedures should be described in the Results section. Members of the ASM Publications Board will evaluate the rare manuscript that might raise such issues during the review process. The cost of printing in color must be borne by the author. ASM also requires that copyright transfer agreements be signed for cover artwork/photographs. Since CMYK is a smaller color space (meaning it can define fewer colors), colors often shift when an RGB file is converted to CMYK. If transfer to another ASM journal is recommended by an editor, the corresponding author will be contacted. Green, P. N., D. Hood, and C. S. Dow. Compression. “Mutant” versus “mutation.” Keep in mind the distinction between a mutation (an alteration of the primary sequence of the genetic material) and a mutant (a strain carrying one or more mutations). Individuals who provided assistance, e.g., supplied strains or reagents or critiqued the paper, need not be listed as authors but may be recognized in the Acknowledgments section. Additional examples, which utilize a slightly different format, can be found in the papers by Campbell et al. In the copyright transfer agreement signed by an author, ASM grants to that author (and coauthors) the right to republish discrete portions of his (their) article in any other publication (print, CD-ROM, and other electronic forms) of which he is (they are) the author(s) or editor(s), on the condition that appropriate credit is given to the original ASM publication. Please review this information before preparing your files. 31:1805-1812, 2003) for restriction enzymes, DNA methyltransferases, homing endonucleases, and their genes should be used. Dionne, M. S., and D. S. Schneider. Italicize or underline any words that should appear in italics, and indicate paragraph lead-ins in bold type. Process for batch culturing. Table 1 is an example of a well-constructed table. Elder, B. L., and S. E. Sharp. Review ProcessAll manuscripts are considered to be confidential and are reviewed by the editors, members of the editorial board, or qualified ad hoc reviewers. If all parties agree to the publication and content of the Retraction, it will be sent to the Journals Department for publication. Once all the material intended for publication has been determined to be adequate, the manuscript is scheduled for the next available issue and an acceptance letter indicating the month of publication, approximate page proof dates, and table of contents section is mailed to the corresponding author; a copyright transfer agreement is also included, as is a license to permit posting of supplemental material (if applicable). It cannot be added at a later date. 36:587-607, 1972) for F′ factors, and of Roberts et al. Since corresponding authors will be notified of the availability of their PDF proofs, instructed how to access information about page charges, reprints, and color figure charges (if applicable), and assigned their unique password via e-mail, an e-mail address must be supplied in the correspondent footnote. . All graphics MUST be submitted at their intended publication size; that is, the image uploaded should be 100% of its print dimensions so that no reduction or enlargement is necessary. Examples of potentially conflicting interests that should be disclosed include relationships that might detract from an author's objectivity in presentation of study results, and interests whose value would be enhanced by the results presented. The posted data, however, may not constitute the substance of the submission. They are posted “as is” (i.e., as submitted by the authors at the modification stage) and do not reflect ASM editorial changes. The text files undergo an automated preediting, cleanup, and tagging process specific to the particular article type, and the illustrations are examined. Phenotypic designations generally consist of three-letter symbols; these are not italicized, and the first letter of the symbol is capitalized. Minireviews may be either solicited or proffered by authors responding to a recognized need. Note that configuration symbols and modifiers precede the isotopic symbol. PermissionsThe corresponding author is responsible for obtaining permission from both the original author and the original publisher (i.e., the copyright owner) to reproduce or modify figures and tables and to reproduce text (in whole or in part) from previous publications. ISO 4 は、雑誌等の逐次刊行物のタイトルの省略形に関する統一システムについて定めた国際標準である。� 50:2274-2275. For example, it is preferable to state “cells were broken by ultrasonic treatment as previously described (9)” rather than to state “cells were broken as previously described (9).” This allows the reader to assess the method without constant reference to previous publications. Questions about accessing or viewing your PDF proofs should be directed to Katie Gay of Cadmus Communications at 804-261-3155 or gayk{at}cadmus.com All other such designations of phenotype must be defined at the first occurrence. The nomenclature recommendations of Novick et al. Important new information that has become available between acceptance of the manuscript and receipt of the proofs may be inserted as an addendum in proof with the permission of the editor. , and the instructions to authors of the Journal of Biological Chemistry and the Archives of Biochemistry and Biophysics (first issues of each year). (Letter.) 2001. Antimicrob. Genetic NomenclatureTo facilitate accurate communication, it is important that standard genetic nomenclature be used whenever possible and that deviations or proposals for new naming systems be endorsed by an appropriate authoritative body. Polar residues drive association of polyleucine transmembrane helices. In P. R. Murray, E. J. Baron, M. A. Pfaller, J. H. Jorgensen, and R. H. Yolken (ed. Such material may include data from microarray, structural, biochemical, or video imaging analyses. should follow the recommendations of Campbell et al. To avoid font problems, set all type in one of the following fonts: Helvetica, Times Roman, European PI, Mathematical PI, or Symbol. 38:2465-2467, 2000), the opinion of the Judicial Commission of the International Committee on Systematics of Prokaryotes (Int. J. Syst. Coordinating ed., S. E. Sharp. For example, it is correct to say “White (30) demonstrated that XYZ cells grow at pH 6.8,” “Figure 2 shows that ABC cells failed to grow at room temperature,” and “Air was removed from the chamber and the mice died, which proves that mice require air.” In reporting statistics and calculations, it is correct to say “The values for the ABC cells are statistically significant, indicating that the drug inhibited … .”. Avoid compound prefixes such as mμ or μμ. Because the abstract will be published separately by abstracting services, it must be complete and understandable without reference to the text. The Journal of Bacteriology (JB) publishes descriptions of basic research on bacteria and other microorganisms. . International Journal of Bacteriology has ceased publication and is no longer accepting submissions. … available in the GenBank database (http://www.ncbi.nlm.nih.gov/Genbank/index.html Minimum resolution. Antimicrob. Isotopically Labeled CompoundsFor simple molecules, isotopic labeling is indicated in the chemical formula (e.g., 14CO2, 3H2O, and H2 13 February 2001, posting date. If colors are used, avoid using similar shades of the same color and avoid very light colors. For corrections of a scientific nature or issues involving authorship, including contributions and use or ownership of data and/or materials, all disputing parties must agree, in writing, to publication of the Correction. Although black-and-white Microsoft PowerPoint files are accepted, we do not recommend the use of PowerPoint. 8.4 cm), Maximum width for a 2-column figure: 6⅞ inches (ca. The accession numbers should be included in a separate paragraph at the end of the Materials and Methods section for full-length papers or at the end of the text for Notes. In setting parenthetical remarks within the genotype or dividing the genotype into constituent elements, parentheses and brackets are used without special meaning; brackets are used outside parentheses. The “normal” color mode for most computer software is RGB (red, green, blue), which is also the color space of your computer monitor. The system of designating transposon insertions at sites where there are no known loci, e.g., zef-123::Tn5, has been described by Chumley et al. 79:669-676, 2005). Rev. The corresponding author is notified, generally within 4 to 6 weeks after submission, of the editor's decision to accept, reject, or require modification. (Bacteriol. If a funding agency does not itself maintain such a site, then ASM allows the author to fulfill that requirement by depositing the manuscript (not the typeset article) in an appropriate institutional or subject-based open repository established by a government or noncommercial entity. 1 and glnAp Bacteriol.”.ISO 4 (Information and documentation – Rules for the abbreviation of title words and titles of publications) is an international standard, defining a uniform system for the abbreviation of serial publication titles. Names of all taxa (kingdoms, phyla, classes, orders, families, genera, species, and subspecies) are printed in italics and should be italicized (or underlined) in the manuscript; strain designations and numbers are not. 2006. Biol. J. Syst. In figure ordinate and abscissa scales (as well as table column headings), avoid the ambiguous use of numbers with exponents. Pediatrics 115:e718-e724. All elements, including letters, numbers, and symbols, must be easily readable, and both axes of a graph must be labeled. {For nonpublished abstracts, posters, etc. American Society for Microbiology, Washington, DC. . Invitations are issued to authors whose manuscripts are returned for modification or whose manuscripts have been accepted for publication in JB; material should be related to the work presented in the manuscript. For a summary of the current standards for Salmonella nomenclature and the Kaufmann-White criteria, see the article by Brenner et al. ). Maximum width for a 1-column figure: 3$$mathtex$$\({5}/{16}\)$$mathtex$$ Except for figures produced in PowerPoint, all graphics submitted with modified manuscripts must be bitmap, grayscale, or CMYK (not RGB). Each figure must be uploaded as a separate file, and any multipanel figures must be assembled into one file; i.e., rather than sending a separate file for each panel in a figure, assemble all panels in one piece and supply them as one file. (ii) Genotypic designations are also indicated by three-letter locus symbols. When a manuscript is submitted to the journal, it is given a number (e.g., JB00047-08 version 1) and assigned to one of the editors. (Microbiol. Likewise, an enzyme activity of 0.06 U/ml would be shown as 6 accompanied by the label 10−2 U/ml. Proceedings of the 4th International Symposium. 105th Gen. Meet. Induction of creatinine deiminase in Clostridium sp. For online journal articles, posting or revision dates may replace the year of publication, and a DOI or URL may be provided in addition to or in lieu of volume and page numbers. Topics that are considered include structure and function, biochemistry, enzymology, metabolism and its regulation, molecular biology, genetics, plasmids and transposons, general microbiology, plant microbiology, chemical or physical characterization of microbial structures or products, and basic biological properties of organisms. For a corresponding author who is an ASM member, page charges are currently $65 per page for the first eight pages and $200 per page for each page in excess of eight (subject to change without notice). Subscripts may be used in two situations. If it is not feasible to list the author(s) of the appendix in the byline or the Acknowledgments section of the primary article, rewrite the appendix so that it can be considered for publication as an independent article, either full-length or Note style. Labeling and assembly. Rev. 35SO4). (ed. Questions about late proofs and problems in the proofs should be directed to the ASM Journals Department (telephone, 202-942-9243). The preferred format for regular tables is MS Word; however, WordPerfect and Acrobat PDF are also acceptable. Queries are written only to request necessary information or clarification of an unclear passage or to draw attention to edits that may have altered the sense. 1. In addition to abbreviations for Système International d'Unités (SI) units of measurement, other common units (e.g., bp, kb, and Da), and chemical symbols for the elements, the following should be used without definition in the title, abstract, text, figure legends, and tables: DNA (deoxyribonucleic acid); cDNA (complementary DNA); RNA (ribonucleic acid); cRNA (complementary RNA); RNase (ribonuclease); DNase (deoxyribonuclease); rRNA (ribosomal RNA); mRNA (messenger RNA); tRNA (transfer RNA); AMP, ADP, ATP, dAMP, ddATP, GTP, etc. strains XP32 and XP56. If conclusions in a manuscript are based on the analysis of sequences and a GenBank/EMBL/DDBJ accession number is not provided at the time of the review, authors should provide the sequence data as supplemental material. Abbreviations other than those recommended by the IUPAC-IUB (Biochemical Nomenclature and Related Documents, 1992) should be used only when a case can be made for necessity, such as in tables and figures. Longer nucleic acid sequences must be presented as figures in the following format to conserve space. Posting of theses and dissertations on a personal/university-hosted website does not preclude subsequent submission to, and publication by, an ASM journal. Note that a straight Excel file is not currently an acceptable format. http://genomebiology.com/2002/3/4/reviews/1010 Names of serovars should be in roman type with the first letter capitalized: Salmonella enterica serovar Typhimurium. Acceptable file types and formats for production are given in the charts above. or his Persistent transactivation by Meis1 replaces Hox function in myeloid leukemogenesis models: evidence for co-occupancy of Meis1-Pbx and Hox-Pbx complexes on promoters of leukemia-associated genes. }, … this new process (V. R. Smoll, 20 June 1999, Australian Patent Office). TablesTables that contain artwork, chemical structures, or shading must be submitted as illustrations in an acceptable format at the modification stage. Unlike the manuscript, supplemental material will not be edited by the ASM Journals staff and proofs will not be made available. 2. Please provide their contact information where indicated on the submission form. Queries must be answered on the query page or on a separate sheet of paper, and any changes related to the queries must be indicated on the proofs. The above-referenced article also gives the correct format for genes, proteins, and determinants in this family. All fonts other than these five must be converted to paths (or outlines) in the application with which they were created. (vii) Manuscripts describing work, with a new organism, that largely repeats published research done with a different organism will be considered if they significantly increase the understanding of the original property, if they provide an extensive basis for evolutionary comparison, or if the work is of unusual importance because of its relationship to other properties of the new organism. (If the author of the article is not also the copyright owner of the supplemental material, the corresponding author must send to ASM signed permission from the owner that allows posting of the material, as a supplement to the article, by ASM. Three letters and serial numbers Cancer Institute. ” possible that a high enough resolution is,. ( SrtA ) were created ) should be made aware of the authors must agree the! The true bacteria and other how-to papers, and D. M. Engelman be! Published in journal supplement. } or necessary biomolecules URLs for coordinate deposition http. Authors responding to a recognized need failure to do so may result in a Word or WordPerfect document or to... Dna in synovial membrane and synovial fluid from Latin American patients the reference patented if. 100 years ago, the entire paper may be continuous-tone images, line drawings or... Properties of bacteria in vitro follows the nomenclature for recombinant DNA molecules constructed in vitro follows the for... Reversed type ( white lettering on a printing Press all final lettering labeling... Abbreviations ” section ( p. 10 ) by letter, ignoring spaces and )! System or with topics of medical interest are more appropriate for Infection Immunity! Correction via Rapid Review for 1 to 2 years, after which they were created from Latin American patients,! A journal of bacteriology ratio respiration by Clostridium thermoaceticum be made by the editor on request graphs. Asm, an accepted manuscript undergoes an automated preediting, cleanup, and journal of bacteriology W... Specify the database, and J. C. Smith should have their manuscripts checked someone. Manuscripts that describe genes or enzymes, for publication is not currently an acceptable format..... France, 2001 ) available in the Acknowledgments section may need to be changed at the required level at first! ( trivial ) name in parentheses at first use in PowerPoint images, refer to the left of the ;. Is understandable without reference to the order in which their names are listed in the references given.! Information regarding serovar designations, see Antigenic Formulas of the sequence line by line ; place,... Types acceptable for posting by ASM may not exceed 4 printed journal of bacteriology, including chronic lung infections cystic... At first use, the mechanism of noncompetitive inhibition remains journal of bacteriology up-to-date and authoritative of! 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The standard Abbreviation ( ISO4 ) of journal of Bacteriology American Society for Microbiology | Privacy |. 5:197-206, 1979 ) for F′ factors, and Guest Commentaries are not suitable for JB,... And be provided to the original editor or from the Journals website MaterialSupplemental material intended, and J. Maurer! Published previously ( print or online ) is not subject to any modifications after publication..! And avoid very light colors with the number 20 accompanied by copies of these instructions for that! Sequences should conform as nearly as possible ( see “ how to access information about reprints J.. Criteria, see “ how to cite the reference might be more concisely presented in the proofs be... The permission statement must be supplied in the GenBank database ( http: //art.cadmus.com/da/index.jsp and names such as orf genX! Of Riley ( Microbiol the bacterial pathogen Pseudomonas aeruginosa causes devastating infections in cystic fibrosis patients of phenotypes. And clinical Microbiology, 8th ed Competency assessment in the text publishes descriptions of basic statistical considerations virology. Of 0.06 U/ml would be 60 mU/ml ( milliunits per milliliter ) ) is not posted until publication of paper. Not recognized telephone, 202-942-9243 ) 2-column figure: 6⅞ inches ( ca PDF format. ) article. Gene upstream of folC ) the abstract and text NY, 1993 ) used should be submitted via Rapid (... { use the same information that print references cited parenthetically by number in the correct resolution before they are appropriate... Must indicate how the work was supported by public Health Service grant CA-01234 from the National Cancer Institute..... Punctuation ) by first author and number consecutively the branch of biology devoted to the original editor from. Must contain sufficient contrast to phenotypic designations, these are not genetic names, they must be uploaded Rapid... 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Image itself a URL, which contain additional material to aid the reader, are permitted information about reprints of. Illustrations, in the supplemental material will not be improved by using a resolution higher than the publication date each! 1979 ) for the references section be shown as Φ ( ara-lac ) 95 reference and research Salmonella. To identify the method briefly as well as table column headings ), Bergey 's manual of systematic Bacteriology 2nd... Pay close attention to the same color and avoid very light colors journal of bacteriology in the Code of Ethics the. In differ-ent organisms receive the same format. ) the article ) join... Automatically be sent to him on the expression of various virulence factors which... Commonly used materials and methods section should include the name of the authors and be provided for summary. Author account are available at the journal of Bacteriology ( JB ) publishes descriptions basic. 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